The Faculty
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Anindita (Oni) Basu
Associate Scientist (Joint Appointment) & Associate Professor
Affiliation: Genetic Medicine; Center for Nanoscale Materials, Argonne National Laboratory
Emailonibasu@uchicago.edu
Focus
Selected Publications
R. Dohn, B. Xie, R. Back, A. Selewa, H. Eckart, R. Prusty Rao, A. Basu, “mDrop-seq: Massively parallel single-cell RNA-seq of Saccharomyces cerevisiae and Candida albicans” biorxiv, doi: https://doi.org/10.1101/2021.07.06.451338 (submitted)
M. Hammes, A. Moya-Rodriguez, C. Bernstein, S. Nathan, R. Navuluri, A. Basu, “Computational modeling of the cephalic arch predicts hemodynamic profiles in patients with brachiocephalic fistula access receiving hemodialysis”, PLoS ONE, accepted (pdf)
S. Olalekan, B. Xie, R. Back, H. Eckart, A. Basu, “Characterizing the tumor microenvironment of metastatic ovarian cancer by single cell transcriptomics”, Cell Reports, 35, 109165 (2021) https://doi.org/10.1016/j.celrep.2021.109165 (pdf)
A. Guzzetta, M. Koska, M. Rowton, J. Kweon, H. Hidalgo, H. Eckhart, A. Moon, A. Basu*, M. Bressan*, S. Pott*, I. Moskowitz*, “A Hedgehog-FGF signaling axis patterns anterior mesoderm during gastrulation”, PNAS, 117, 15712 (2020) https://doi.org/10.1073/pnas.1914167117 (pdf)
A. Selewa, R. Dohn, H. Eckart, S. Lozano, B. Xie, E. Gauchat, R. Elorbany, K. Rhodes, J. Burnett, Y. Gilad, S. Pott, A. Basu, “Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation”, Scientific Reports, 10, 1535 (2020) (pdf)
M. Hammes, R. L. McGill, A. Basu, T. Blicharski, K. Delaney, “Hemodynamic effects of hemodialyzer pump speed on arteriovenous fistulas”, Clinical Nephrology, 91, 138 (2019) (pdf)
N. Habib*, I. Avraham-Davidi*, A. Basu*, T. Burks, K. Shekhar, M. Hofree, S. R. Choudhury, F. Aguet, E. Gelfand, K. Ardlie, D. A. Weitz, O. Rozenblatt-Rosen, F. Zhang & A. Regev, “Massively parallel single nucleus RNA -seq with DroNc-seq”, Nature Methods, 14, 955 (2017) (pdf)
Y. Tao, A. Rotem, H. Zhang, C. B. Chang, A. Basu, A. O. Kolawole, S. A. Koehler, Y. Ren, J. S. Lin, J. M. Pipas, A. B. Feldman, C. E. Wobus and D. A. Weitz, “Rapid, targeted and culture-free viral infectivity assay in drop-based microfluidics”, Lab on a Chip, 15, 3934 (2015) (pdf)
E. Z. Macosko, A. Basu, R. Satija, J. Nemesh, K. Shekhar, M. Goldman, I. Tirosh, A. R. Bialas, N. Kamitaki, E. M. Martersteck, J. J. Trombetta, D. A. Weitz, J. R. Sanes, A. K. Shalek, A. Regev and S. A. McCarroll, “Highly Parallel Genome-Wide Expression Profiling of Individual Cells Using Nanoliter Droplets”, Cell, 161, 1202 (2015) (pdf)
A. Rotem, O. Ram, N. Shoresh, R. A. Sperling, M. Schnall-Levin, H. Zhang, A. Basu, B. E. Bernstein and D. A. Weitz, “High-Throughput Single-Cell Labeling (Hi-Scl) for Rna-Seq Using Drop-Based Microfluidics”, PLoS ONE, 10, e0116328 (2015) (pdf)
A. Basu, Y. Xu, T. Still, P. E. Arratia, Z. Zhang, K. N. Nordstrom, J. M. Rieser, J. P. Gollub, D.J. Durian and A. G. Yodh, “Rheology of Soft Colloids Across the Onset of Rigidity: Scaling Behavior, Thermal, and Non-thermal Responses”, Soft Matter, 10(17), 3027 (2014) (pdf)
